YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC1002.16c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.98
Transmembrane Helix	52	71	0.93
Non-Cytoplasmic	72	95	0.91
Transmembrane Helix	96	117	0.88
Cytoplasmic	118	125	0.90
Transmembrane Helix	126	145	0.94
Non-Cytoplasmic	146	154	0.61
Transmembrane Helix	155	175	0.94
Cytoplasmic	176	184	0.90
Transmembrane Helix	185	207	0.93
Non-Cytoplasmic	208	219	0.83
Transmembrane Helix	220	240	0.94
Cytoplasmic	241	299	0.94
Transmembrane Helix	300	319	0.84
Non-Cytoplasmic	320	324	0.67
Transmembrane Helix	325	344	0.88
Cytoplasmic	345	351	0.80
Transmembrane Helix	352	372	0.93
Non-Cytoplasmic	373	377	0.87
Transmembrane Helix	378	401	0.91
Cytoplasmic	402	411	0.85
Transmembrane Helix	412	433	0.88
Non-Cytoplasmic	434	439	0.85
Transmembrane Helix	440	464	0.90
Cytoplasmic	465	499	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLSHTSSN KSNGSIFTKA DESEKVISRS NTASPISIEN THLTKSERDS LLFRLDLVLA  60
   61 PTIMILYLVA FLDRSNIGNA KVAGLPEDLK LKGDQFNIIA SVFYVTFILF EMPTTLLMKK 120
  121 VQPKRMLAFI VISYSLTTIF TGFCHNFGGL LAARLVLGFC EAGLFPCLAL YLTMIYSRVE 180
  181 LAPRIAYLFA SSALSGAFGG LFAYAVLHMD GVGGFAGWRW LFIIEGLIGF VCGVAVYFII 240
  241 PNDITKAWFL SKTHQEMMRK RQLERAADLE AAHFDWKGVK SAFTDFKVYL YALSEFGQDT 300
  301 CLYGFSTFLP AIISGMGYTS LSVQYMTIPV YILGAATYIA ASFLSDRFHH RGIILIIGNI 360
  361 FPIVGYILLL ACQNNKSVLY FACYLCSVGV YTGAGLNVTW LSANIAPHYK RATAISLQLA 420
  421 IANSSGILAG QIYRYPPKYI AGHLTSLIAI FISTVLHVVN IFFLKHQNSK KQKSLASSST 480
  481 IDLSEQPKDD KDARFHYIL