YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC688.09
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLHCQEPKI RSLDMLSNSE IKPSENSQKT KVLLTKANNA SNERAPPPLS HFIAGGVAGM  60
   61 LGAIATAPLD VVKTRLQSDF YKDRFLKQTA KSKSPLTAAY RHFMDTCIIL KNVKVHEGTR 120
  121 ALFRGLGPNL IGTIPARSIN FFSYGNGKRI LADLFNNGQE NSQIHLMAAA IAGVITSAAT 180
  181 NPIWLVKTRL QLDKKSGQAA QYRSSIDCII KTIRLEGFRG LYKGLSASLL GVGESTLQWV 240
  241 LYEKFKHAVA IRQLRRKELG IQETIYDKVL DWGGKLGGAG IAKFMAAGIA YPHEVVRTRL 300
  301 RQSPSINGTP KYTGLIQCFK LVWMEQGIVG LYGGLTAHLL RVVPNACILF GSYEVIMHFI 360
  361 G

Type	Start	End	Confidence
Cytoplasmic	1	48	0.61
Transmembrane Helix	49	69	0.65
Non-Cytoplasmic	70	163	0.74
Transmembrane Helix	164	185	0.82
Cytoplasmic	186	361	0.67