YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gpi13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.94
Transmembrane Helix	19	39	0.92
Non-Cytoplasmic	40	426	0.99
Transmembrane Helix	427	449	0.91
Cytoplasmic	450	460	0.83
Transmembrane Helix	461	480	0.87
Non-Cytoplasmic	481	487	0.73
Transmembrane Helix	488	507	0.74
Cytoplasmic	508	519	0.69
Transmembrane Helix	520	540	0.85
Non-Cytoplasmic	541	546	0.67
Transmembrane Helix	547	564	0.90
Cytoplasmic	565	571	0.68
Transmembrane Helix	572	591	0.84
Non-Cytoplasmic	592	615	0.91
Transmembrane Helix	616	636	0.94
Cytoplasmic	637	647	0.86
Transmembrane Helix	648	669	0.90
Non-Cytoplasmic	670	683	0.87
Transmembrane Helix	684	706	0.90
Cytoplasmic	707	716	0.85
Transmembrane Helix	717	735	0.76
Non-Cytoplasmic	736	738	0.60
Transmembrane Helix	739	757	0.75
Cytoplasmic	758	767	0.48
Transmembrane Helix	768	790	0.82
Non-Cytoplasmic	791	809	0.62
Transmembrane Helix	810	835	0.85
Cytoplasmic	836	850	0.57
Transmembrane Helix	851	873	0.87
Non-Cytoplasmic	874	882	0.56
Transmembrane Helix	883	907	0.76
Cytoplasmic	908	918	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKRVKCKK KLTSTIGTWK YIQACIFFAI ILISNFYGLK SFTDGFLLRR AVLNQTSLCE  60
   61 NPPADVREWK NSSGCWAPKI FERAVIVIID ALRYDFLIPY NDSNYYHNAF TTPYETSVLH 120
  121 PENSYLTQFI ADAPTTTSQR LKGLTTGSLP TFIDLGSNFA GTNIDEDNLL LQWKSLDKQI 180
  181 VLLGDDTWDV LFHDYLNETL SQPAFSFNVP DLHGVDNKVN QYVFDYIKDA NFDVLIAHYL 240
  241 GVDHVGHRLG PDHPTMRDKL NQMDRCVKEM MDLLDDSTLL IVMGDHGMDN KGNHGGDSFD 300
  301 EINSVLWMYS KKPTFGYLKQ PGKVLSANQV DLVPTLSLLL GNPIPYGNLG TLIPEPFYYY 360
  361 GDEYLSKAQK INIGQLNRFF SEYDLDASDF LSSSVHKNNN SYLDQYFLDF DYARDAFSYF 420
  421 KAIWAEFSLF PMIIGFLLLI IGGFNLALLM QDKSVIFRMS ANMAPSVMKC LPVCLILILA 480
  481 NNELHSPFPA EFYVLLPSFY ILLNSFNQKL MEYFKGFVKL DYFSIFITFL HVCSFGSNSF 540
  541 TVWEDRLCHF LIITIGLVMF CKCFSEMSPL FACSTYSALA FILLQVISSY VTNCREEQGA 600
  601 FCVSTYISTP DNSLRTLIVL ALMALSSIIL PLILQLHLRR VLGLSLKLYH LSILYFFELI 660
  661 SSIFWIAHHV FANDALLEKQ YHHVLYSLAN TYVICILGVL IWQFFLLSRS KFAKINVIER 720
  721 SYFVFALLYS FLSFLQRPLG HLSLFSCFLQ ILLLIQLKQW QPSVGHNFFS VTLGLLGLSH 780
  781 FFTTGNQAAI SSLDWNFAFI HSKSAENQAI SAIFMFLHTV GAPILTCISI PLFSFEPLSK 840
  841 KNRFLINLFR FSFSFILYNL LISTSTVFFA GFFRRHLMVW KVFAPRFMLS GILLVTHQLF 900
  901 VLIQCFGSSV VKFPEDAE