YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GHT8_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	27	0.88
Non-Cytoplasmic	28	58	0.85
Transmembrane Helix	59	79	0.87
Cytoplasmic	80	87	0.83
Transmembrane Helix	88	107	0.93
Non-Cytoplasmic	108	114	0.66
Transmembrane Helix	115	134	0.84
Cytoplasmic	135	146	0.67
Transmembrane Helix	147	169	0.87
Non-Cytoplasmic	170	177	0.71
Transmembrane Helix	178	199	0.88
Cytoplasmic	200	263	0.81
Transmembrane Helix	264	280	0.59
Non-Cytoplasmic	281	300	0.67
Transmembrane Helix	301	322	0.88
Cytoplasmic	323	330	0.60
Transmembrane Helix	331	349	0.91
Non-Cytoplasmic	350	363	0.64
Transmembrane Helix	364	387	0.85
Cytoplasmic	388	402	0.66
Transmembrane Helix	403	425	0.85
Non-Cytoplasmic	426	432	0.66
Transmembrane Helix	433	453	0.93
Cytoplasmic	454	547	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTLTIVML VFVSMAGWMF GADTGSIGGI TNMRDFQSRF ADRYNPVTDT YSYSSARQGL  60
   61 ITGMVNVGSM TGCILSSPLM DRIGKRVSIM FWTIVYLIGI ILQVTAVPSW VQIMVAKIWT 120
  121 GLAIGALSVL APGFQSEVAP ATLRGTIVTT YQLAVTGGIF IAACINMGTH KLHKTAQWRV 180
  181 SMGINLLWGI IMFIGISFLP ESPRYLIAIG KDEEALDIMC KNNVLPREHE IIQTEYHVIK 240
  241 TDCEAEMAGG PATWGDILGA DIRYRTFLGL GVMSLQQLTG DNYYFYYGFE VFEGTGMNSP 300
  301 YLSALILDAV NFGCTFGGLF VLEFFGRRMP LIIGGVWQSI TFFIYAAVGN RALTRKNGTS 360
  361 NHRAGAVMIV FSCLFIFSFA QTWGPAAYVI VGESYPIRYR SKCAAVATTG NWLWGFLITF 420
  421 FTPFISDSIG FKYGYIFAAC NLCAACIIFL FAHETKGLTL EEINELYLSG AKPWMPRPEN 480
  481 LGQAAKQQQE VLEKSRGVQG ESAAHLENVD NEGMEDTSSN DITSSTSSSE GRAKPESNYV 540
  541 DEQDRYA