YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC9.08c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYSDYLKLL KIFVVGVFPC TLFVNAPHGK LAKQSKLFSK GYISGRVGWV LMELVAPLTF  60
   61 LYAIRNNRHF ESTLPSLGDG SNRDYLDSCR KVLAGMFLVH YANRALVSPL LMAPQVSPMH 120
  121 WTVFVSAVLF NFLNGMSIGL YLVQASVQHH PVSIIRRYIG MFLWLMGWLG NMYHDNILYD 180
  181 LRRSSNKKKD PDNLDTVQSE NSYYRIPYGG LFQYVSCPNY FCEWIEWFGC YLAAGPSAEP 240
  241 FWWFFLSEIL LMLPRALKAH QWYCKKFPKY PANRRAIIPF LM

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.62
Transmembrane Helix	7	29	0.79
Cytoplasmic	30	41	0.67
Transmembrane Helix	42	64	0.82
Non-Cytoplasmic	65	119	0.70
Transmembrane Helix	120	143	0.90
Cytoplasmic	144	153	0.84
Transmembrane Helix	154	172	0.91
Non-Cytoplasmic	173	227	0.89
Transmembrane Helix	228	252	0.59
Cytoplasmic	253	282	0.80