YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMT2_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.80
Transmembrane Helix	53	74	0.86
Non-Cytoplasmic	75	148	0.66
Transmembrane Helix	149	182	0.70
Cytoplasmic	183	191	0.53
Transmembrane Helix	192	216	0.83
Non-Cytoplasmic	217	227	0.63
Transmembrane Helix	228	258	0.80
Cytoplasmic	259	277	0.72
Transmembrane Helix	278	300	0.91
Non-Cytoplasmic	301	598	0.79
Transmembrane Helix	599	622	0.92
Cytoplasmic	623	635	0.91
Transmembrane Helix	636	657	0.85
Non-Cytoplasmic	658	666	0.74
Transmembrane Helix	667	685	0.88
Cytoplasmic	686	691	0.86
Transmembrane Helix	692	712	0.91
Non-Cytoplasmic	713	739	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYEQLHAQS GQLRQRFPSK HSEIEDEVAN EKEELKDATK SALGEVKTNK KYYILGYFLV  60
   61 PLLLTVIAGF VRVWKIADSN VVIWDEAHFG KFASYYLKHE FYFDVHPPLG KMLNAVAGKL 120
  121 VGYDGSFDFS SGATYPEDLN YKFMRLWNAA FGTLCIPLVY FTALNFNYSF LAATLCTLMV 180
  181 ALDNHLATIS RFILLDSMLL FFIISTFFCL SRYHVYHKAP FTFYWFKWLF LTGVCIGCVC 240
  241 SVKLVGLFIT AVVGLYTVDE LWCLLNDKRV TWKAYAGHWI ARVCLLIFLP ILIYAFTFWI 300
  301 QFAVLYRSGP GDAQMPSLFQ ARLEGSPLTK NPIDLMYGSK FTLKSRNPTG ALLHSHVQTY 360
  361 PEGSEQQQVT GYHHKDGNNE WMFVPTHGVA YNYEENDPMN PILNGSVVRL IHPFTNRNLH 420
  421 THKIPAPLNK RMYEVSGYGL GDVGDEKDYW IVNILYDTAH RDAYNVRSLS TVFQLYNPVV 480
  481 GCYLSSSSSS LPSWGFGQIE MYCDPDPDPS NTDTQWNVEE HINPRLPEGS INDYPSSFWS 540
  541 DFLHLNRAML RANNGLIPDE DKLDALRSEA YQWPFLLATL RMCGWGDNQI KYLLVGNPVA 600
  601 YWFATSSLIV FALFVVGAVL AWRRRVLRWS QEACDTFHYA GIYPFLGWFF NYLPYYIMGR 660
  661 VLYVHHYEPS YALSTFTAAF VVDWFTKKMP KIVRVVVFIS LYAIIAGVFI YFKDVTFGMH 720
  721 GPASDFHRLR WLNSWNVHD