YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC23C11.17
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYPRTHIQF PSMLRNRLFK TPHQTGFQWR LGAPATGITI RNQPIRSYSG LRGNFLIDKR  60
   61 LSPVKFNKYS PSDIVFYNIG SSRLYSTETP TPSKVKEAPK QVAAEETKPT TVVKKPSIWQ 120
  121 RVKGGVLHFW DGTKLLGVEI KISSKLVYKM AVGYELTRRE SRQLTRTLKD IGRLVPFSVF 180
  181 VVVPFAELLL PIAVKLFPNL LPSTFEDAKD KEAKKAQLRK TRNEVSNMLR STLKSGKFTF 240
  241 SNETRESKEF RDFFQKVRTS GQSPSREELI EVCKYFKDDI TLDNLSRAQL VAMCRYMNLN 300
  301 AFGTDPLLRY NIRHRMRQIR RDDRAIYIEG INSLSIPELF NACNSRGIRT QGLSPAKLKE 360
  361 ELSVWLDMRI KHGIPSVILM LSNAFSYGYN EGTYDSRWDA LQDTLASIPD ELYHETVVDM 420
  421 PTKQVSNKER LEILREQEEL IEEEAEHVAE HPDLAKKQTE ENKATSKPAV SAKSPESNIP 480
  481 KNERK

Type	Start	End	Confidence
Cytoplasmic	1	171	0.58
Transmembrane Helix	172	193	0.54
Non-Cytoplasmic	194	485	0.99