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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPCC1183.11
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPTSPTSS PGRHHWSNSK DGMPPEYTNQ DPNSDQADNE NSDAKAHQPQ HSPQHSTENQ  60
   61 GHTGTSDTSS LEMELSKLHP ESKQRQLPHS PEHERSRSPI ASVVSYRSHM TLEDENQIFN 120
  121 AEMAVRGSQS LQRRPTGRSV RGSMRRLSSH RSKSMRTSKS KKSGDYERTA ENEEAAQEAE 180
  181 NHLDNFGVVT FGTEAPIKAP DHPVTIFGRI FKFIQQRSFY LRSLIYIIPL GVLLLIPVFI 240
  241 GRFYHPQPPY RDELGHEYER HLHVGGVDLM WMAIWWEIIW LSIWAARYAA KVIPYFFAFF 300
  301 VSFISNNVTK WRCMAVALEF PITLFLWMLA VYVSFLPIMT RRHIGDYGVP DHVRVKLPWQ 360
  361 QSANNVLITL FITSIMNLVE KVLMQLIAMS LHRREYESRI LYNKFAINEL ARLYGYARQR 420
  421 SFDFKDAIHR AQADVFKFAD HQHGKKRAAA ARVAQNALNK TTYKAISAFN FATDMVNKVA 480
  481 GEITNREVEK SSSPKSVVLH LLKTTRGCQS LARCLFEALV NPENPDLVLD DFIPVYTDET 540
  541 GEVDNATLEA CYSIFDRDLN GDITCEEIEL ACVEIGKERK SISASLRDLN DSISKLDGIC 600
  601 MFIVAVITLF IFLYLIARNF SGVLTSAGTT LLGLSWLFSG SAQELLSSII FVFVKHPYDV 660
  661 GDRVDVMING TVTSAMVKEI SIMSTEFRLL TGKVIQAPNS LLNTLWILNM RRSDGIADPV 720
  721 TVNLKFGTTL QQIEQLRIKI IDFLKEEKRD YKPDLLTEVT DLPDLYSMSL CVVFFHKYNF 780
  781 QDEVLRMRRR NMFMCALMTY MQELDIVSPI FNSPGKSKDS PMYVNFNNGS MEGVKLSGGN 840
  841 DGGGTENHRD STVGGGILKN PKAYPYREPT PPGSSDSDTA SVSKKRVDFS LGTRHLMPAF 900
  901 DDVADIGSKR LGRDSLPDAV IENAGTEAMR REAEERRRAE EEEYERSQQE SSSNEENENA 960
  961 SRTSGARFSF SSKASRLSAR PSARTVPPLQ HISIQDLREP NENNTSKSAR L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle