YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE00809
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEVKIYLFF FFRFHFAVHF LFGDGRMSGQ SVPLIFLNCS SIFIFGKDEK YAECPIENGT  60
   61 DPCYLLKEVH RAKEFRTYFL AILPIIFSVI ACLLNIGYLI AQLKCFTQEK TSFKKRQVFL 120
  121 ISRSLSIILA NLLFYVVVIV WKANGFVYTS AMIFILIGGI NFLSVTGTYI GLTILLYTAI 180
  181 AHQFWYMTKL TLTHCWLIIG LIWLLSAASS ICIGLWGATL FYPESAPISC SFEKCQQPLA 240
  241 IIIVVGLSLC YGTVIGLYIA MMARLHRLVR KSSMIQARSN SNSMTAMKRL GLNMITFAIG 300
  301 SIPILIVCIV ALANLRELSS LGEGSKGPCK TFLHSSLFVE VEILASVAAI VWLIAMIIDP 360
  361 VINILADKKM RGLFAKQINR VSQRIRRAST KSTISTDDQ

Type	Start	End	Confidence
Cytoplasmic	1	8	0.78
Transmembrane Helix	9	27	0.79
Non-Cytoplasmic	28	78	0.94
Transmembrane Helix	79	100	0.92
Cytoplasmic	101	118	0.91
Transmembrane Helix	119	141	0.91
Non-Cytoplasmic	142	152	0.76
Transmembrane Helix	153	178	0.86
Cytoplasmic	179	194	0.81
Transmembrane Helix	195	218	0.92
Non-Cytoplasmic	219	238	0.92
Transmembrane Helix	239	261	0.94
Cytoplasmic	262	291	0.92
Transmembrane Helix	292	313	0.95
Non-Cytoplasmic	314	342	0.93
Transmembrane Helix	343	366	0.88
Cytoplasmic	367	399	0.99