YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sfxn-1.1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLVVNQTV LPDISKPKWD QGTYAGRAKH FFSSTNPLTL FSSRIQQEKC KEIVTNYKTG  60
   61 VISPTLTVDE LWKAKTLYDS TYHPDTGEKM FFLGRMSAQM PGNMVTTGML LGLYRTLPGV 120
  121 VFSHWFNQSF NAVVNYTNRS GNSKATNERL FVSYCCATSG AMTVALGLNK MVKNSHGLAA 180
  181 RLVPFAAIAL ANAINIPMMR SNEASEGMEL KDENDQLVGK SQKMAALSIA QVTLSRIAMA 240
  241 MPYMVMTPII MNRITRTAYY RTRPWMQKYS EIPIQTLIAG IGLYFTTPLC CALFPQKSSV 300
  301 EVEKLESSVQ KEIMSRPNPP KIVYYNKGL

Type	Start	End	Confidence
Cytoplasmic	1	99	0.95
Transmembrane Helix	100	122	0.73
Non-Cytoplasmic	123	149	0.83
Transmembrane Helix	150	169	0.88
Cytoplasmic	170	177	0.75
Transmembrane Helix	178	198	0.88
Non-Cytoplasmic	199	231	0.81
Transmembrane Helix	232	254	0.77
Cytoplasmic	255	271	0.78
Transmembrane Helix	272	295	0.68
Non-Cytoplasmic	296	329	0.67