YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQKCASHL EIARLESLNF KISQLIYFVL IITTLFFTFF ALKVIQKKCI FQLSTKILLY  60
   61 QNLFSANIHQ IFLGITIVER LNIAFFKLND KCIPLRPETN CQLYLEMFIA GLSGMVYGQT 120
  121 GLLFERACAT FIKKYEKRKS LATGIITSII VLLLSGSTAR IIIWDDPLSE YQLACTSWPS 180
  181 KSRDRSTMFF SICTFISLFN LVISLLIRRH NEKLEYSTPF VVGPRFRKRE VIDSTSTICF 240
  241 LTFFQFIFMF IYSFGVFLLG TIREIIGYEQ YYFWVVWVYT IPFIAASFPI LLIYRIRYSN 300
  301 TNRIMIIKQF TSTKQTQEDH IKQMKNVWN

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.66
Transmembrane Helix	24	45	0.89
Cytoplasmic	46	57	0.63
Transmembrane Helix	58	78	0.60
Non-Cytoplasmic	79	102	0.72
Transmembrane Helix	103	124	0.67
Cytoplasmic	125	140	0.91
Transmembrane Helix	141	163	0.93
Non-Cytoplasmic	164	186	0.95
Transmembrane Helix	187	207	0.95
Cytoplasmic	208	234	0.95
Transmembrane Helix	235	258	0.86
Non-Cytoplasmic	259	274	0.83
Transmembrane Helix	275	296	0.92
Cytoplasmic	297	329	0.98