YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-28
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSECARSDV HNVLTSDSMK FNHCFIISII IISFFTTTKS VRVLLKQNLL PTCTRNLLFS  60
   61 AIINGIIHQC VTAVIRLRAF YHAIVYASDP CAILFQSSQC FFDGNLYYYT NLFSSFCCFS 120
  121 LFLDRLFSFK PRSSYHNHQT LASIVLILSQ IVLPIGPLYW VFYDAFYTSY VLMCTYPPPM 180
  181 SVMKLHEVNN IRICVLIVLL FFAIFLYIHN KIREKRMVHN VYNINSRYKS YENYLATKSV 240
  241 CIVIFSQILC VGPTSSITSV FIRFRDSIPL EWFHLIISYL TGLTYSNFLL PLIILYQDKQ 300
  301 IAKKRRIMIQ RLQNKNETSF DHFDTLKSLW GKKTGNQETL F

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.67
Transmembrane Helix	21	41	0.84
Cytoplasmic	42	56	0.64
Transmembrane Helix	57	77	0.75
Non-Cytoplasmic	78	105	0.79
Transmembrane Helix	106	127	0.88
Cytoplasmic	128	139	0.88
Transmembrane Helix	140	163	0.88
Non-Cytoplasmic	164	187	0.98
Transmembrane Helix	188	209	0.92
Cytoplasmic	210	234	0.96
Transmembrane Helix	235	257	0.83
Non-Cytoplasmic	258	274	0.76
Transmembrane Helix	275	296	0.95
Cytoplasmic	297	341	0.98