YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7505304
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.93
Transmembrane Helix	87	108	0.86
Non-Cytoplasmic	109	126	0.90
Transmembrane Helix	127	149	0.90
Cytoplasmic	150	156	0.87
Transmembrane Helix	157	176	0.94
Non-Cytoplasmic	177	183	0.72
Transmembrane Helix	184	209	0.87
Cytoplasmic	210	216	0.87
Transmembrane Helix	217	240	0.90
Non-Cytoplasmic	241	246	0.83
Transmembrane Helix	247	265	0.96
Cytoplasmic	266	525	0.99
Transmembrane Helix	526	548	0.88
Non-Cytoplasmic	549	560	0.87
Transmembrane Helix	561	581	0.93
Cytoplasmic	582	593	0.82
Transmembrane Helix	594	620	0.80
Non-Cytoplasmic	621	635	0.67
Transmembrane Helix	636	658	0.75
Cytoplasmic	659	664	0.76
Transmembrane Helix	665	687	0.82
Non-Cytoplasmic	688	695	0.81
Transmembrane Helix	696	718	0.91
Cytoplasmic	719	808	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILQKLVFLP CQLKKISYTF RRIFDRKQTT APHWHHLSAR ESNFEEDDQD IGSLNDGQLT  60
   61 NYSSQYSINM GVQQVEPLLV PQAPDGGYGW VIVFAAFMSN LVVDGISTAF SEFKQSYKER 120
  121 YQESDGLTVF IGSLIIGTYL LVGPLVSALC NKYEQRYVVM AGGLISGIAF MIAPASPNIY 180
  181 VFMLIYGVMG GLGFGMIYLP AIVVVGFYFD SKRAMATGIS VAGSGVGTFL VPLICQVCIA 240
  241 NLGWQKTIWV LAVMIFSCVF YGYLYRPLPM VDLNEIRDQE MEPLRQALSK VEDDEDEAVE 300
  301 SPHPNRSTSA ASGAIEDEAV SQNPEVQRLR SILTEGDEGS ETPKSDAHKV RSHTATRSRK 360
  361 HTMTSNSGSQ HDLKLSRGNL SSDNRLSRVS ARDFNQSLSK LSKSGGASNL SIAMSGVDPK 420
  421 EFQRPMNRQD IFYGGSIQNL KEFKEEGTMA GYRASTLSIP RSVVGQAVSQ LNLSRTGSRL 480
  481 GGPGIAEDEE EMIEPFVDDG CCKVLPLPMR NALSEMIDLN LLKNKTMMIL CISNLLGMMG 540
  541 FYIPIMFLKD LSESMKLDMS LAMFLVPIFG VFNTIGRVFF GWLTDQKILS ALTINNLSLI 600
  601 VSGLLTLACP LLTSIAGQYF YAIVFGFIIC KLFYYFQHLE FAAYICLTSI VLADLMGLEN 660
  661 LTNSFGLLVV ARGIASLVGP PFAGIVYDIT GSYDTAFYFG GLVLLVAGLI SATIPFVTKK 720
  721 DADTADGMPQ LQDQDNVSGK LSVLTERSEE ALTDYQRTIQ SMKQQHQLLQ DLEEEKRKQK 780
  781 QNGVVEEGNE MDDNVCSSNN DNDKLMFY