YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cyp-25A4
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILIISTIF FTIITFISYS IWRRHAIFKL RSSIGIPGPP VHWLWGNLNI IKDRVSRLGY  60
   61 NDTTQWHPTL HTKYGPIFGL YCGTQLHITV SEEEDIKEIF IQNFSNFSDR MTPDIFGMNQ 120
  121 LNQSLLQNTY ATGWKHTRSA IAPIFSTGKM KAMHETLVSK IDIFLEVLKE KSSSGQKWDI 180
  181 FENFQSLSLD IIGKCAFAID SNCQRDRTDL FYVQARKFVG AVDLKKSWIL PVSLILPELS 240
  241 WLWRFLYKFS DLSAAELPLV KGLVDLYDRR RAGEGGNDST DLLNLLIRRE TIGKMTQREV 300
  301 IENCFAFLIA GYETTSTAMM FSAYLLAEYP IVQQKLYEEI KKTKENAGLN YDSIHNMKYL 360
  361 DCVYKESLRF YPPTTHFTNR VCLNDMTIRG QIYPEDSTLK VQPYTIHRNP ANWESPDEFQ 420
  421 PERFENWEEK SSSLKWIPFG VGPRYCVGMR FAEMEFKTTI AKLLDTFELS LVPGDPPMIP 480
  481 ETNGVIFRPR SPVRLNLKLR I

Type	Start	End	Confidence
Cytoplasmic	1	3	0.37
Transmembrane Helix	4	22	0.76
Non-Cytoplasmic	23	501	0.71