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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pgp-12
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWRKNGDAI EPIDGIPMEN GKKKDTTVNV STEDVGSIDS DEEPKIVYEP SKMEKLINYM  60
   61 LCRGDLASRE LSVKPVTLLG LFRYAERTDY ALLCFGIFLS FISGIAQPGL GIIAGNITNS 120
  121 LLIHNATSDD FYDSAMTNVW LFGGIGIIVL IVNFVQYMCF QYCCIRITSK MKQHYIQSIL 180
  181 RQNAGWFDKN HSGTLTTKLH DNMERINEGI GDKLGVLIRG MVMFVAGIVI SFFYEWRLAL 240
  241 MMMGIGPLCC VCMSLMSRSM SSFTSKELAG VGKAGSIAEE SLMGVRTVQA FNGQEEMVEK 300
  301 YTVELGKGKS FAIQKGLWGG VFGGIFLLFL FSYFGGGIYY GGQLLRWKII ETPGDVFIVV 360
  361 ISMLIGAYFL GLISPHLMVL LNARVAAATI YEIIDRTPDI DVYSTEGQKM TNVVGKVVFE 420
  421 EVHFRYPTRK KVKVLNGLNL TVKPGTSVAL VGHSGCGKST SVGLLTRLYE PEGGKVMIDG 480
  481 QDVRSLNIDW LRKTVGIVQQ EPILFNDTIH NNLLIGNPSA TREDMIRVCK MANAHDFIQK 540
  541 MPNGYETMIG DGSVQLSGGQ KQRVAIARTL IRDPKVLLLD EATSALDAQS ESVVQSALNN 600
  601 AAKGRTTIMI AHRLSTIREA DKIVFFENGV IVESGNHEEL VALGGRYAKL VEAQKFKESD 660
  661 DIEDNGDEHE EETSTVGRHD RLSSRQVSFH KSCESLASAD LEIGYASTFN TFTLKTAQEE 720
  721 IENEDFAEEV QRVMEEDGVI NSGYLDIFKN AQGNYLYLSV GTFFAILRGS ELALLANMFG 780
  781 FVFAAFKEPE DEMVKALGLI FILYVALGLF VFITQVISGT LFTIVAENLG LKFRVQSFKN 840
  841 LLYQDASFFD NPAHAPGKLI TRLASDAPNV KAVVDTRMLQ VIYSITSITI NLITGYIFCW 900
  901 RIAIAGTIMI VLFATMMISM AYKIARENLK QIRKDEAGKI AIEIIESVKT IQLLTSTQRF 960
  961 LTHYKDAQLV QHKSEMRKSY IQSVNNAISQ TFMYFAMFVC YGVGTPLMYH GIVEAEPTFR1020
 1021 AINCMMMGSV AVMHSSHNFP EFVKAKTAAG MLFKLIYRKS KTGDVMEGNN TEIRGNVLFE1080
 1081 SVKFSYPQRP MQPVMTDLHF SAHSGQTVAL VGPSGTGKST CIAMLERFYD VSGGALRIDG1140
 1141 QNIKSLSLHH LRTQMALVGQ EPRLFAGTIK ENVCFGLKDV SVEKVHQALE LANASRFLAN1200
 1201 LPAGIDTEVG EKGGQLSGGQ KQRIAIARAL VRDPKILLLD EATSALDSES ERAVQEALDR1260
 1261 AREGRTCITI AHRLSSIQNS DLIVYIDHGM VQEAGNHAHL MSLRGKYYNL IKKQDLTT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle