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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pgp-14
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKDDPDNR GFDDQRRPSQ RSTVLAIPAL AVNDPKSDPK IASDLPANYV DDDDDAPKMY  60
   61 TPSLLEKILN YALCRGDIAN QQLEAQPVSI PGLFRYGKKF DYLLLFIGTI CAIISGVSQP 120
  121 ILALVSGRVT NALLVYPPTS KQFRNKANEN VYIFLGIGIF ISITNFIQYM CFQHCCTRVM 180
  181 AQMRHRFVYS VLRQNAGWFD KNHSGTITTK LNDSMERIRE GIGDKLGVLL RGFAMLIAAI 240
  241 VVAYIYEWRL ASMMLGVAPT CCICMSLLAR QMTSTTIKEL IGVGKAGSIA EESLMGVRTV 300
  301 QAFNGQEEMV GRYEAELEKG RKFAVWKGFW SGFFGGLFFF WLFSFLGCGM LYGAYLLKVG 360
  361 IITTPGDVFI VVMSMLLGAY FLGLISPHMM VLLNARVSAA SIYQTIDRVP KIDPYSKAGK 420
  421 RLQNVVGRVK FENVHFRYPS RKDAKILNGL NLVVEPGTSV ALVGHSGCGK STSVGLLTRL 480
  481 YEPEAGNVTI DGTDVRELNI EWLRNTVGIV QQEPILFNDT IHNNLLIGNP GSTRETMIEV 540
  541 CKMANAHDFI EKMPKGYDTL IGDGGVQLSG GQKQRVAIAR TLIRDPKVLL LDEATSALDA 600
  601 QSESIVQSAL NNASKGRTTI MIAHRLSTIR EADKIVFFEK GVIVEAGNHE ELVRLGGRYF 660
  661 DLVKAQQFKA DPEATEEFEE EEIDLDDTSR SSRRSSMTSA RSGSEAFRRG NSLNDSFSGS 720
  721 KRSAQADAEN SAFAANEAAI MAEDGQITAG YLDIFKNAKG NYLYMFLGTV FALIRGLELP 780
  781 ALALIFGWVF EGFTFVPYGG RMMHRMAMAV IAFASVGVGV WFSQLASSVL FAVVSENLSM 840
  841 RFRVQSFRNL LYQDASYFDN PAHAPGKLIT RLASDAPNIK AVVDARMLQV IYALAAIIAN 900
  901 IAIAFIYCWQ IGILGTSLIL LLAFVMIGLA YKISLMNVEQ IQNDDAGRIA IEIIENVKTI 960
  961 QLLTRCELFF DHYQTSSKQQ KRSELKKGMI EAINYSLTQS FMYFMMCFTY AVGIRIIYQG1020
 1021 DKSSDDTFKG IIAMMLGAVA VMNSAQYFPE FVKAKTAAGM LFNIIYRKPR TGDLMEGDRP1080
 1081 EIRGNILFEN VKFSYPQRPL QPIMKGLQWT ALRGQTVALV GPSGSGKSTN IGMLERFYDV1140
 1141 TGGALRIDGQ DIRKLSLFHL RTQMALVGQE PRLFAGTIRE NVCLGLKDVP LEKINQALEL1200
 1201 ANANRFLANL PAGIDTDVGE KGGQLSGGQK QRIAIARALV RDPKILLLDE ATSALDSESE1260
 1261 RAVQEALDRA REGRTCITIA HRLSSIQNSD LIVYIDKGKV QEAGNHTQLM HQKGRYYKLI1320
 1321 KKQDLAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle