YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-38
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGCESNGLL YHHPVYTFAI FIQGLSSFLA FPMMFFVFKK YGHKVYYHSN LLFLVALNAA  60
   61 SCLILAGLTA WSATNFFVQL IIKPSPCDML MRTEFCSKIR ASFLFAFLLV STSHAGILIE 120
  121 RSCATIFVKS YEKQGKALGA ILAILAVTVS ALTIYVVIYN EDKEEFITTC LTFSASKSIG 180
  181 NQIYAMFFAQ LILDALVSIV HLCLYNYNKR TTGNNSVSLS EQFQRNENMK TLKQVTPLMI 240
  241 LSNVTIGVYI FVISVFRLSK NYLPVNWYEI IAALLFIMPH MPLMFSSLLF FEFCRDERRL 300
  301 VAVRRKIVAD QENAQTDQLN MLIENWETKF ESRENDSRVV REHTASSKLC RFFNKRQRTI 360
  361 AAIY

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.95
Transmembrane Helix	16	38	0.91
Cytoplasmic	39	49	0.83
Transmembrane Helix	50	71	0.93
Non-Cytoplasmic	72	98	0.92
Transmembrane Helix	99	118	0.93
Cytoplasmic	119	136	0.87
Transmembrane Helix	137	159	0.92
Non-Cytoplasmic	160	182	0.96
Transmembrane Helix	183	205	0.89
Cytoplasmic	206	234	0.96
Transmembrane Helix	235	256	0.89
Non-Cytoplasmic	257	269	0.83
Transmembrane Helix	270	291	0.93
Cytoplasmic	292	364	0.97