YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-46
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLIFVLLAT FVNAAFSYKI LVFSPATSKS HLISNGRLAD ELARAGHDVT VLELDFLGIS  60
   61 QTTNSVKVAK KRIIDGFQES TNFKNVLHGF SETVMEEPSF TDEIKGWWAY QNVYNDLCAE 120
  121 FLKMDDIFNE LKNAKFDGFF AEQINLCGFG YAHALEIPRH FLISSCPFAA PVYDFTGLPM 180
  181 PTSTVAFAAD LSISPTYTER ARNLFVAVLT KLEFTLLNNR LQAHFQHKFG EHFPSLYSVT 240
  241 SDVDVIFVAT DEIIDISTTT LQNIVHVGGL GVDDDVAEMD NVFASEMSKG KEGVIYFSLG 300
  301 TIANTTKIDS KVMRTVLDIV KKFPDYHFVI RADKYDLSTR EYAKSVSNAF VSDWLPQPAI 360
  361 LHHPRLKLFI THSGYNSIVE AARAGVPLIN IPFMFDQNLN SRAVEKKGWG IRRHKKQLLT 420
  421 EPEEIEKAIS EIIHNKKYSL KAQRIRDLIK SKPLSSSQLL IKTTEWAIKN HGLDEIKFES 480
  481 RGQTTWTYYN LDVIIPVFWL SISLVIPTIF GWYKFSCFGH VEEKKGKSKR D

Type	Start	End	Confidence
Signal Peptide	1	17	0.94
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	492	0.99
Transmembrane Helix	493	515	0.70
Cytoplasmic	516	531	0.76