YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-57
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.64
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILILLLGL TQIVTSLNIL VFLLGTNQFE RNIFEFLAQQ LALRHHNVIS IKPVLIPEEP  60
   61 RLVKPKLHLV REKVIKNVLN KDLFKPLEDA VPNAAWRSTY DFDNYLEPYY KAHNASCYKL 120
  121 LNSNLVDSLK KESLDLAIVY SGNPCLNALT HLVAVPTIYF DTEGLTDETL IAAGAPIDLL 180
  181 TPPSHCFIAE SKGYPILNLY KNSVCYFQEM IAQLGLPAVS SLVSSRHRLL DEPITNIFRT 240
  241 DYTIKKRFKN FPNVNTLKQQ SAAYFVNTDP LLEPPRALPL NVIPVGGLHI DHPKPLFSPW 300
  301 NTTIASAKEG LIIVSFGTQA DSSKMSEYHA KAILKALTNL NDYRIYWRIG PNMHLDGIDI 360
  361 EKIPKHINLT TFIPQNDLLA HKSCKLFVTN GGMSSVMEAV AHGVPIVGVP LYGSNRYNLQ 420
  421 KVSNKGLGIV IDKDDLNEIS LYGAMKKVLE SAKYKNTAKE MSKEFKSRTT SPFAAALHVI 480
  481 DHIGRHHSFA YMQPAFQPIY TRVDFYLLLL IILLPVIPLH LFFTFCIKSS AMNVQDNKVL 540
  541 EAERKFLPKK VPETKKNA

Type	Start	End	Confidence
Signal Peptide	1	16	0.67
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	504	0.98
Transmembrane Helix	505	525	0.90
Cytoplasmic	526	558	0.90