YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04352
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.85
Transmembrane Helix	15	36	0.86
Non-Cytoplasmic	37	75	0.88
Transmembrane Helix	76	97	0.85
Cytoplasmic	98	102	0.78
Transmembrane Helix	103	125	0.81
Non-Cytoplasmic	126	132	0.61
Transmembrane Helix	133	154	0.69
Cytoplasmic	155	167	0.81
Transmembrane Helix	168	191	0.88
Non-Cytoplasmic	192	197	0.88
Transmembrane Helix	198	219	0.94
Cytoplasmic	220	266	0.97
Transmembrane Helix	267	289	0.90
Non-Cytoplasmic	290	299	0.84
Transmembrane Helix	300	318	0.90
Cytoplasmic	319	327	0.92
Transmembrane Helix	328	347	0.92
Non-Cytoplasmic	348	356	0.66
Transmembrane Helix	357	378	0.92
Cytoplasmic	379	387	0.75
Transmembrane Helix	388	405	0.86
Non-Cytoplasmic	406	410	0.61
Transmembrane Helix	411	433	0.90
Cytoplasmic	434	445	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAIGPVDKK AVMKLLIPAL ICNMLAFTSI LPLFPTILNY YSKEGHRDWL YDISVKGLQS  60
   61 FQEAIGVPHS ERYDKVFFGG FLGSLFSALQ FISSPTLGSL SDIYGRRAVI SLCCIMTFIS 120
  121 YVNWLKADIF AYFVLSRILG GLSKGNINVA TAIVSDVYSP EDHPKGMALI GISYSLGFLI 180
  181 GPMIGAYFST IASIDSPFAY PAMFSIILTI LEFGFLFFLP ETLDLKEQKS LDDIKKTRKE 240
  241 LVTPKDLFQF TAVNAPQERK QEMQKVGWIY FLFLFLYSGL EFTLPFLTHI RFDFDNMQQG 300
  301 KVYLFTGLLM LPIQAKYVRK TPIEKQKAVA EFGIACIIPA YLLVAVAKTP LVLYAGLFFY 360
  361 AIASATVVTS LTSLVHVIYP QSEKGVLAGI FRSLGCLARA LGPVISSTFF WLLGATTCYI 420
  421 MGAFLLFIPL ILLKRLENPA AKKTV