YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILFLLLTS LTFCYSHNFL VVSPVFGYSH MKFMNKVADT LANGDHNVTI LQTYNYEHFG  60
   61 KIRMAKNTNV EILDYHLDES KAVSNENSAS AFKYMWNTEI INNPITGAIA TSTVLYGEMK 120
  121 TMCEKVLLDK KLHKWILSKN FDGFISEPFD FCGLYLGDHL KLNIIPMHSS TKSLPSVYAI 180
  181 GEPSLLNFLP SMRTKFGTEQ TVFDRIGDII ALPCLELAFS KLFEKQYKQA SQLLNGDVRH 240
  241 WKEILQTATF YFSNANDFIA FPTPSLPKHV HIGGFTIDPP KNLKLEEEYN KILSLRKSTV 300
  301 LISFGTVIQS ADMPESFKDG IIKMFHLLPD TTFIWKYEVE DQQFIERLPN NAILKKWVPQ 360
  361 PALLADPRLK LFVTHGGLGS TLEVAYSGKP ALMIPVFGDQ LLNAKMLSRH GGATVFDKYD 420
  421 LEDAEKLTSA IKEIIGNEEF NKKSHHIADL LRNQPIDPKA NLLKHVEFSA KFGRVDALEP 480
  481 YNVHYNFVQY YMLDAFAIIF SILIIIFYLA HLLFKFVYKH VFKTKSKKE

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	494	0.99
Transmembrane Helix	495	514	0.93
Cytoplasmic	515	529	0.89