YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7495294
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFVKQTCDP QADQMFLSYS KVDDSCYRKM IGFLKFALIG TVLLGVANGA SVATASAKGS  60
   61 NCTVQDGYAA LMCLVRLSDF AEKVDNLDMN DKTKLKEFKR SCDSLHSCYS NLNCTTKSDD 120
  121 EKDKYVESIK QYCDAVVYVS DGFSKCSDKL NEKKSKCFDD WDPIPNKIHL EEDEAKIEKI 180
  181 KNEACKTYFG KDDCMKKEIT ETCGKEEWDS FRKSIHILLT LQCSASPHTS YFDSPEFLSV 240
  241 SLHITTSLAT PIHLIALYII LQKTPTYMKT VKWYLLNLHL WIVLFDYSVG FLFEPVLLLP 300
  301 CLAVLPHGIL SVVGVPTIFQ ALMVIFFLGN VHVSITAIFE SRFYLFCYFT GKKYWSCLRW 360
  361 IWLAAHYIVI FVVLCYVSTL VPDQDYALRQ LSKKISCFPD SFYKNTFVVA DDSSFHVCAC 420
  421 FIFFVVSCFE VLTFVIFIFW TFMQQQRCSR RTLHTQKMLF FALIVQMGVP LAMLIVPLTY 480
  481 AFISVISLYY NQKVTYFFVI IGSLHGVVSA LVMLFVHKPY RDALKSMVTI LQQSSRQRTT 540
  541 GYNVTSPKIF HL

Type	Start	End	Confidence
Cytoplasmic	1	32	0.60
Transmembrane Helix	33	53	0.49
Non-Cytoplasmic	54	239	0.87
Transmembrane Helix	240	261	0.91
Cytoplasmic	262	277	0.83
Transmembrane Helix	278	299	0.81
Non-Cytoplasmic	300	316	0.66
Transmembrane Helix	317	339	0.84
Cytoplasmic	340	359	0.87
Transmembrane Helix	360	380	0.95
Non-Cytoplasmic	381	416	0.96
Transmembrane Helix	417	442	0.89
Cytoplasmic	443	458	0.95
Transmembrane Helix	459	483	0.89
Non-Cytoplasmic	484	494	0.87
Transmembrane Helix	495	517	0.93
Cytoplasmic	518	552	0.99