YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-18
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTAEELDS RNCASESLTN ALISITMKFN FIFIITVVLI SYCFTWLAIQ ALWKHNIFSN  60
   61 STRLILIVCL LNSVVHQTTM LETRITQAYR SVVYDSEPCK LLFRSSDCVF ELYLYYPTGY 120
  121 FSTYSVFSLT FDRLISHYKS RYYHMHQYFI ATSLLVLQLL LTMFSFYIVF YGVSLAGYVP 180
  181 MCNFRPELTV YYGAINNVRT GVMVSCIIVT MFVYYVCVKS EKQIQKCSYS PGERYSAYEN 240
  241 VTTSQSICIS IVLQFSCIMI SSFGSNLLIH ITSKTTVSEE VFYAIVSFLP GVTYANLCLP 300
  301 LVIYFKTKLT TRNRKNRIAV MTSMYGDAGE HIDRLKRSWE

Type	Start	End	Confidence
Cytoplasmic	1	28	0.75
Transmembrane Helix	29	49	0.93
Non-Cytoplasmic	50	60	0.59
Transmembrane Helix	61	80	0.55
Cytoplasmic	81	147	0.58
Transmembrane Helix	148	171	0.89
Non-Cytoplasmic	172	197	0.88
Transmembrane Helix	198	218	0.93
Cytoplasmic	219	246	0.92
Transmembrane Helix	247	271	0.79
Non-Cytoplasmic	272	281	0.89
Transmembrane Helix	282	305	0.91
Cytoplasmic	306	340	0.97