YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-21
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLTAEELD SQKCASEGLT SVLTSITMKF NFLFITTVIL LSYCFTWLAI RALWKNNIFS  60
   61 NSTRLILIAC LLNSVVHQTT MLESRMRQTY RSFVFASEPC NLLYRSSDCV FELHSYYLTG 120
  121 YFSTYSVCSL AFDRLVSHYK SKFYHTHQYF IAVSLLVLQL LLTLVSFYIA YYGVHLAGYV 180
  181 PVCIHYPRLA VHYSTVNTVR TVVMVCCLVV TGFIYYLSVK SEKQIQKSSY SPGKRYTAYE 240
  241 NVTTSQSVCI LIVLKLFCNM LSSIGINLLL LMGEVVSEGT FVLVALFLPG VTYANLCLPL 300
  301 VIYFKTKLII RNRKFRIAVM TSMYGDAGEH IDRLKKSWE

Type	Start	End	Confidence
Cytoplasmic	1	29	0.72
Transmembrane Helix	30	50	0.93
Non-Cytoplasmic	51	61	0.55
Transmembrane Helix	62	81	0.76
Cytoplasmic	82	148	0.74
Transmembrane Helix	149	171	0.93
Non-Cytoplasmic	172	197	0.92
Transmembrane Helix	198	219	0.92
Cytoplasmic	220	250	0.92
Transmembrane Helix	251	272	0.84
Non-Cytoplasmic	273	280	0.81
Transmembrane Helix	281	304	0.91
Cytoplasmic	305	339	0.97