YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE10512
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.96
Transmembrane Helix	70	95	0.87
Non-Cytoplasmic	96	114	0.87
Transmembrane Helix	115	135	0.91
Cytoplasmic	136	141	0.90
Transmembrane Helix	142	162	0.94
Non-Cytoplasmic	163	168	0.80
Transmembrane Helix	169	192	0.85
Cytoplasmic	193	202	0.84
Transmembrane Helix	203	225	0.84
Non-Cytoplasmic	226	235	0.80
Transmembrane Helix	236	256	0.93
Cytoplasmic	257	301	0.94
Transmembrane Helix	302	323	0.84
Non-Cytoplasmic	324	341	0.78
Transmembrane Helix	342	360	0.88
Cytoplasmic	361	375	0.81
Transmembrane Helix	376	398	0.90
Non-Cytoplasmic	399	403	0.83
Transmembrane Helix	404	425	0.91
Cytoplasmic	426	431	0.78
Transmembrane Helix	432	453	0.90
Non-Cytoplasmic	454	471	0.89
Transmembrane Helix	472	493	0.92
Cytoplasmic	494	543	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHTPPPNKK LSRATSLDSP PEKTIFRIDT VDLDLPSTNN GSTSMAADDQ SQDEEHSAHS  60
   61 VLFPSMRLML AAMLCCCFIT LSISSSNLAV ALICMTSCPV HGYGGTLEWQ SQQEGLVLAA 120
  121 QNAGSLIMIV TGMWADRLNG KWMVFIGLLL CCIGNLMLPL LASKSFWFAV LARISIGASD 180
  181 ACLMPAVNSL ITRWFPQAER PAAIGLISGG RQIGTLFILP TAGYLCTRKD ILDGWPAIFY 240
  241 LSATISVLVT VFWIPFGADK PAKQICISSR EKEFIETRIA CESIGKRTDR TRRVPYGAML 300
  301 HSKPLWACIF ALICHEYPLV IMLQFLPNYM RDVLEFAPTK NGIIAALPIL CLFLSKTFSS 360
  361 SLSSYLTTKL RLDKTFVCKG FNAVASAGLA ICISFVPFFN KESAFLAVFC LCGAMIFAGL 420
  421 HTPGVITAMV QIAPAFSGII TGWSFFAVAW FSIGNKILTK YIVQSGSVTE WGMVFRVSAL 480
  481 VAALPVIVFT IWGSADREWW AAPSSKCSVA SFHRPSIRDR SREMSRATSS TSLGQQSRVS 540
  541 STR