YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-23
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTAEELLD SLKCASDGLA SALTSVTLKF NCAFISTIVL ISYCFSWLAI QALWNNNIFS  60
   61 NSTRLILIVC LLNSVVHQTT VMETRITQIY RSIVFASEPC EILFRSSECE IELYFYYLTN 120
  121 YFSTYSVFSL TFDRLISHYK SKYYHMHQYF IAISLLVLQF LLAILSFYIA YHGVPLAGYV 180
  181 PMCNYYPKMA VHHITINDVR TVVMVSCIIV TGFAYYLSVK SEKQIQKCSY SPGERYSAYE 240
  241 NVTTSQSVCI LIVLQFSCTM ISSFGVNLLL MMQEAVSEET FTKVGAFLPG VAYANLCLPL 300
  301 AIYFKTKLTI QNRKLRIAVM ISMYGDVGEH IARLKKSWEY

Type	Start	End	Confidence
Cytoplasmic	1	29	0.87
Transmembrane Helix	30	50	0.91
Non-Cytoplasmic	51	61	0.69
Transmembrane Helix	62	81	0.66
Cytoplasmic	82	148	0.75
Transmembrane Helix	149	171	0.93
Non-Cytoplasmic	172	198	0.91
Transmembrane Helix	199	219	0.91
Cytoplasmic	220	247	0.91
Transmembrane Helix	248	270	0.84
Non-Cytoplasmic	271	284	0.83
Transmembrane Helix	285	304	0.91
Cytoplasmic	305	340	0.88