YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-12
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLGTFIFLL TFLFFECYSS KILIFNPIFG FSHVKFISKM ADIIADHGHH VTLFQPYHIA  60
   61 LKNLDGLVKN KNIEILNYHP THYEELLKAE PQTFSFFWDS YLVGNPVIGA FLMPKLLGGE 120
  121 FKKTAMEVLS DQKLINELKD RKFDLVIAET FELTGFYLAH LLDVPCIPMM SAVRYPIFND 180
  181 QFGQPSLLGH VPQIGSAVAG EAGFYDRLND MFRFFFMGIS QEQLNKYQNY FIEEAIGRPV 240
  241 PFWKDLVKQS PIYITNSNPY LDYAVPSTAA IVQVGGITMD LKKLKQVGEL PEEYENILKE 300
  301 RESTVLISFG SVIRSYEMPE SFKAGLIKVF ESLPDVTFIW KYEKDDLEFQ KRLPKNVHLK 360
  361 KWIPQPSLLA DKRVKLFITH GGLGSTMEVA YTGKPAIVVP IFGDQHHNAV MLARHGGAVA 420
  421 YDKFDLKNGE KLTAVVHEMI SSTKYQENAE ALQHVLFNQP IDPKMNFLNH LDFAIKFPNH 480
  481 RAQVPAINQL GFVAHYYLDV LLFLLVSSIV ITYLAISLLK KVLGKCLTKK TKSD

Type	Start	End	Confidence
Signal Peptide	1	19	0.97
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	494	0.99
Transmembrane Helix	495	516	0.88
Cytoplasmic	517	534	0.87