YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-11
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLTFSCLC FLLKVNYAAK ILIFNPIFGF SHVKFVSKLA DIIADHGQEV TLFQPFHLAL  60
   61 KNLDGIVKNK NIEIINYYPD HYDDLLKLET QTFPDFWDSQ LMNNPVLMAF MLPRILGGEF 120
  121 KKTTIQLIKD KEILKKLKDK KFDVAISETF ELTGMYMSHF LGVPCIPILS AVRLDIFNEA 180
  181 FGQSSAFGYL TQQGSKLAPD AGFLDRLNDV YRDFFSKMAF RGMAQYQNDV IEKAAGHVVP 240
  241 YWKDLVKEAP VYMTNSNPYL DFAVPTTATI VHIGGITINL EKMNHVDALP EEYEIILKEK 300
  301 ETTVLISFGS VIRSYEMPEN FKAGLIKVFE SLPDVIFIWK YEIDDLEFQK KLPKNVHLKK 360
  361 WVPQPSLLAD KRVKLFVTHG GLGSTMEVAY TGKPALMVPI FGDQPMNADM LARHGGAIAY 420
  421 DKFDLVDGKK LTETVRDLVT NPKYEQKAKE LLDVLTNQPI DPVMNLMKHL EFAIKFPNLR 480
  481 SQIPEINQVG PIAHYYLDVI VFLIFVSIIT AYISFQIVCR ILSRILSKKV KSD

Type	Start	End	Confidence
Signal Peptide	1	18	0.98
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	493	0.99
Transmembrane Helix	494	515	0.91
Cytoplasmic	516	533	0.85