YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE16768
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLNSSKLS TFFRFTKMYL LNPGSMYKLT VMNMTTAAIE QTDAIFRAAL IFEWILISIG  60
   61 FGETMLLWYL LRYTNQYHRN LAMIVEQLPN QYFPSLLARM YMIYKQLTIS NTADLIEDQG 120
  121 FLFAVWLRNS LLFVAFYFAP FPVIERCFAT LYMHDYETNK RRWISYLLST ILYIFAITSA 180
  181 QFFIFGSSNR EIHIFLITGF NLIAFGLTFV MERYNKKRYS KLRKNVNSDY SLSVRAQLSE 240
  241 NINSTLPFKV MCFSIAFFAS LCTSMLHVDE WTESQTIRNW VYMAFNFSCW SYGTLVPFFM 300
  301 LAYNPLWQKE LRRLGGKFCC CLCPANRIGA DQTGRKRPPT KVKDTFGKNC NVEDAEHTTI 360
  361 YFSQLNADWN APTEQKKRRE RKNERLSISD AQAQSVITSR SISNHSVMTR PDSIELDSIC 420
  421 EAGDSMDDLR EILSHTETTP TRTLPTRFER MASQMTCPMI GVKKLSTDKL QEIFLRQGVE 480
  481 EPEEQQEPEE AMGVPTQADQ LDHVRFTSGI ERPVQLTRID SNYSISENEE ESENGSTLDI 540
  541 DKTPESAETT WLRDKKAKYV QLIFKISKNI LKVGD

Type	Start	End	Confidence
Cytoplasmic	1	49	0.76
Transmembrane Helix	50	71	0.89
Non-Cytoplasmic	72	124	0.79
Transmembrane Helix	125	144	0.78
Cytoplasmic	145	162	0.82
Transmembrane Helix	163	185	0.93
Non-Cytoplasmic	186	191	0.92
Transmembrane Helix	192	211	0.96
Cytoplasmic	212	244	0.95
Transmembrane Helix	245	268	0.86
Non-Cytoplasmic	269	283	0.87
Transmembrane Helix	284	307	0.83
Cytoplasmic	308	575	0.93