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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: unc-5
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.08
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEITITTQP KSGYVIRNKP LRLQCRANHA TKIRYKCSSK WIDDSRIEKL IGTDSTSGVG  60
   61 YIDASVDISR IDVDTSGHVD AFQCQCYASG DDDQDVVASD VATVHLAYMR KHFLKSPVAQ 120
  121 RVQEGTTLQL PCQAPESDPK AELTWYKDGV VVQPDANVIR ASDGSLIMSA ARLSDSGNYT 180
  181 CEATNVANSR KTDPVEVQIY VDGGWSEWSP WIGTCHVDCP LLRQHAHRIR DPHDVLPHQR 240
  241 RTRTCNNPAP LNDGEYCKGE EEMTRSCKVP CKLDGGWSSW SDWSACSSSC HRYRTRACTV 300
  301 PPPMNGGQPC FGDDLMTQEC PAQLCTADSS RIVISDTAVY GSVASIFIVA SFILAILAMF 360
  361 CCKRGNSKKS KPLKPQKMNS EKAGGIYYSE PPGVRRLLLE HQHGTLLGEK ISSCSQYFEP 420
  421 PPLPHSTTLR SGKSAFSGYS STRNAGSRAA LIQECSSSSS GSGGKRTMLR TSSSNCSDDD 480
  481 NYATLYDYME DKSVLGLDTS QNIVAAQIDS NGARLSLSKS GARLIVPELA VEGEKMLYLA 540
  541 VSDTLTDQPH LKPIESALSP VIVIGQCDVS MSAHDNILRR PVVVSFRHCA STFPRDNWQF 600
  601 TLYADEGSGW QKAVTIGEEN LNTNMFVQFE QPGKKNDGFG WCHVMTYSLA RLMLAGHPRR 660
  661 NSLSAAKRVH LAVFGPTEMS AYRRPFELRV YCVPETGAAM ESVWKQEDGS RLLCESNDFI 720
  721 LNEKGNLCIC IEDVIPGFSC DGPEVVEISE TQHRFVAQNG LHCSLKFRPK EINGSQFSTR 780
  781 VIVYQKASST EPMVMEVSNE PELYDATSEE REKGSVCVEF RLPFGVKDEL ARLLDMPNES 840
  841 HSDWRGLAKK LHYDRYLQFF ASFPDCSPTS LLLDLWEASS SGSARAVPDL LQTLRVMGRP 900
  901 DAVMVLERFL SAFPQIVSP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle