YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE16987
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.62
Transmembrane Helix	7	26	0.89
Non-Cytoplasmic	27	34	0.62
Transmembrane Helix	35	58	0.86
Cytoplasmic	59	65	0.71
Transmembrane Helix	66	85	0.70
Non-Cytoplasmic	86	93	0.79
Transmembrane Helix	94	114	0.93
Cytoplasmic	115	121	0.89
Transmembrane Helix	122	141	0.95
Non-Cytoplasmic	142	158	0.91
Transmembrane Helix	159	179	0.94
Cytoplasmic	180	195	0.90
Transmembrane Helix	196	217	0.90
Non-Cytoplasmic	218	231	0.80
Transmembrane Helix	232	254	0.82
Cytoplasmic	255	262	0.86
Transmembrane Helix	263	284	0.88
Non-Cytoplasmic	285	291	0.83
Transmembrane Helix	292	312	0.93
Cytoplasmic	313	324	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAVAPIFG VLGSCMGCMV FVENIAKQEP SAMNLMTFST FLFISTVGLV STSKFFTVKN  60
   61 QIPLKGYFKT VTMFFIVNVV NNQALNFHVP VPLHIIFRSG SLLATLILSV VMVGKSYSAR 120
  121 KYISVFAITI GIVICTLATS TQGDSGLSME EASKHYKEWT IGIIMLTFAL LASAVLAIYQ 180
  181 QQMYEKYGKH PDEAMFITHL ISLPFFLIMG SDIVSAATKL SASAPHSVFP WLPSLWVDLI 240
  241 ASCLLQYGCI KYVYQLNSRV DSLTVTLVVT LRKFLSLIVS IVYFKNPFTP QHWLGAILVF 300
  301 AGTLAFADIW GSQTANKQDE KKKQ