YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gnrr-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTINCSRSV PPDVTVNDSV LSIVFTYLAL FILAFVGNVT MFLILCRNQL VKVRRVHSLL  60
   61 LHMNIAHLLV TLVVMPKEIL HNYMVAWFAG DVMCRICKFF DVFAISLSMN VLICITLDRF 120
  121 YSIFFPLYAM RARKSVQRMV SFAWTISFVT SAPQLYLFKT ATHPCFDWYT QCVSKNFIGE 180
  181 LSNDVVFFFS IVNIIQVYIA PLFVTVVCYS LILWRISRKS KLVGEKESEK SSELLLRRNG 240
  241 QNNLEKAKSR TLKMTFVIVL AFIFCWTPYS ILMFLHFLRH TDWIPKDIRK FIYAFAVLNS 300
  301 AISPYLYGYF SFDIRKELQL LFACSKATAA DRHLSCSANV SRNQVTERMR KRSASACNFD 360
  361 GGKTNNTLSP RPPRGHSLRH KPSSSGIDKR NHNVQLEIID F

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.96
Transmembrane Helix	23	46	0.90
Cytoplasmic	47	58	0.87
Transmembrane Helix	59	80	0.87
Non-Cytoplasmic	81	98	0.90
Transmembrane Helix	99	121	0.83
Cytoplasmic	122	139	0.82
Transmembrane Helix	140	158	0.95
Non-Cytoplasmic	159	193	0.91
Transmembrane Helix	194	213	0.94
Cytoplasmic	214	254	0.95
Transmembrane Helix	255	277	0.90
Non-Cytoplasmic	278	290	0.92
Transmembrane Helix	291	310	0.90
Cytoplasmic	311	401	0.93