YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-22
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNTFLLPL LLLLGSFVGL TEPYKILMYT NLFGHSHIKM LGAVSDTLTD AGHDLTVLMP  60
   61 VIDFKQENKT AMKSTKNIIK IQPGQDISKT IETMEKFMTQ LWTTDNSNPL FMVFHAPAMS 120
  121 AIFASQCRKV LEDKELIERL RAENFDLAIT EPFDTCAYAL FEAIKIRAHV AVLSCSRLDH 180
  181 VSKAIGQPIA PSYVPGTQST HGERMTIWQR FMNILHFLMG DFLFSYIGDE DFKVAKEIIP 240
  241 GVRSWREVLP EASFIFTNHI PLMDFPAPTF DKIIPIGGIS VKTQKKSLEL PEKWNKILGL 300
  301 RKKNILVSFG SNARSADMPE HFKQNVLKVA ESMPDVTFIW KYENEKDTLA DHLDNVYLGD 360
  361 WLPQNELLGD PRLSLFVTHG GLASVTELAL MGKPAVMVPL FADQARNANM LKRHGGAAVL 420
  421 HKTDLGNAET IRNTIKKVLE NEKYRVNAER LAEMLNNQPT NPKDTLIKHV EFAAKFGQLP 480
  481 SMDPYGRHQS YIEYYLLDII SIALVLILTT SFISFQLIKC TFRMCCGSGK VKKD

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	493	0.99
Transmembrane Helix	494	515	0.82
Cytoplasmic	516	534	0.78