YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18193
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.87
Transmembrane Helix	82	104	0.88
Non-Cytoplasmic	105	121	0.62
Transmembrane Helix	122	145	0.83
Cytoplasmic	146	161	0.75
Transmembrane Helix	162	185	0.90
Non-Cytoplasmic	186	203	0.81
Transmembrane Helix	204	223	0.95
Cytoplasmic	224	230	0.64
Transmembrane Helix	231	251	0.91
Non-Cytoplasmic	252	319	0.84
Transmembrane Helix	320	341	0.91
Cytoplasmic	342	354	0.76
Transmembrane Helix	355	376	0.88
Non-Cytoplasmic	377	396	0.73
Transmembrane Helix	397	417	0.93
Cytoplasmic	418	445	0.81
Transmembrane Helix	446	467	0.86
Non-Cytoplasmic	468	473	0.63
Transmembrane Helix	474	495	0.84
Cytoplasmic	496	512	0.54
Transmembrane Helix	513	547	0.77
Non-Cytoplasmic	548	952	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDTSTIFG APSMTSYGGI VNEMYDGGGG DAEIPGENGK SPKKGAVPLI DEESQSTPRG  60
   61 STSGDGGGGS PSMEFSSSRP GGLSTISGVF APVALSMFSI LLFLRMGFVV GQLGFLMTIL 120
  121 QLAMAYAIVM LTVLSLCAIS SNGAVEGGGV YYMISRSLGP EFGGAIGVLF FVANVFSCAL 180
  181 YISGFTEALM NNIGNGQFPD SPAWRFVYCV LVSLVLLVLS LLGSALFAKT ALITFVLISV 240
  241 CYGTWIVSVI FNGRMEVLIP KVNTPAYRVL VNASDPSQGT VEDFNQTLTA NYTGWSFHTL 300
  301 GENMFPEYTM DYTTEKPTDF ALMFAIIFSG VTGLMAGANM SGELARPSVS IPRGTVQAVF 360
  361 MTLFVYVMTA FLMATTSSRY LLQNDYTVMM DTNFHRVFIL IGIFSTTLFS SMSNLIGSSR 420
  421 VLNRLSHDKL FGCLLRPAKI EIGDRNPVVS VVITWMCVVL VFLVGAMNKI AKLTSIFFLL 480
  481 SYMGVNVATL ALELTSAPNF RPTFKYFSWQ TCALGVVATA TMMLVVDASM SALGVVVLMS 540
  541 LIMVLHYQAP SVSSGSISQA LIYHQVRKYL LLLDVRKEHV KYWRPQILLL VSRPASACSL 600
  601 LDFVNDLKKS GLYLVGHVRK GEMDSSQVVD PLQQVFPYWL SLIDYLKLKA FVELTMSNNI 660
  661 RHGIQQLMRL SGLGAMKPNT VVIGFHELAP SQVTLQESQL LKDLRFSKID RAAVVEYFTA 720
  721 GDYMPKELDG NLERLTPVDY VNVLKDVLHM TKNLCVARHF SKLDKEALAR GWNGQKRYID 780
  781 VWPVDLQKPQ ETGLGWDNSS LFLLQLSCIL SMSSRWRSYT KLRVFICVNS LQDMHRRERQ 840
  841 LKNMLQTLRI EGESSVVPWD HVVCHYQPPN ATASANTATP SVDLPPAYVS AFNDMVKRYS 900
  901 EDAAITLLNL PVPPDNADID ADRYLEMVRN LTDALPPTLL VHGVSSVIST AL