YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-26
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTTEQLDS ESCASGGLAK ALTSPIMKIN FVCIISIIII SYYFFYLVVK TLIKNNIFSN  60
   61 CTRALLIFCS INSIVHQTTM MEVRIRQIYR SIVFDEDHCH ILFNSSECVF ELYFYYMTNY 120
  121 FSTYSVFSLT FDRLIACYFP KLYIKTENLI TITLLIIQFS LTVGTHFYAY LGVPLAGYVP 180
  181 MCSYPPQLAI RFDTVNKVRT LVMSCCIVVT LTILYFNIKA EKRIHHNNFD PNQRYFAYEK 240
  241 MTTSKSVCTL IIIQFLCVLI SSFGVTILRN SKNQLSEEVY HTIVPFLPGV TYANLCLPII 300
  301 IYYKTKSTIS RRKINIAKLT STYGDLDSHM KRLSENWA

Type	Start	End	Confidence
Cytoplasmic	1	25	0.73
Transmembrane Helix	26	49	0.85
Non-Cytoplasmic	50	60	0.63
Transmembrane Helix	61	80	0.57
Cytoplasmic	81	148	0.57
Transmembrane Helix	149	170	0.90
Non-Cytoplasmic	171	197	0.90
Transmembrane Helix	198	218	0.92
Cytoplasmic	219	246	0.95
Transmembrane Helix	247	268	0.91
Non-Cytoplasmic	269	281	0.90
Transmembrane Helix	282	303	0.88
Cytoplasmic	304	338	0.93