YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18973
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIVSRGFSL YFFLLWTFLL VLVVYFYTLL PENEVNGTPV FEERKFISSN FAVSKQLGNN  60
   61 IFELASILGI SRVLHRTPVI FLQNSTYQYM LNRVIQSIPG LLEEFLVLNE TVPDQVVWVD 120
  121 FNRKCCTFEN PQKLKNWKLQ ENEIIYLTGL YYQSFKYFPN MRSELRGFLE TSEKFPTLPK 180
  181 SDNKNYVTCV HIRRSDFFDV GFHVGSEKSI REVIGYIKTN VTLLQDQKVS FVIFGDDINF 240
  241 MRSLIQNQVP NFRFFLFCKI FFFSKAAHST FGWWMGYLSK GNQVYYADIR GTNDSVYKTG 300
  301 DLKPDDYYLP HWIPVKVEAD IFSYRNFFKK KIKISIGFLL FPLCSNHYHV GSG

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	29	0.91
Non-Cytoplasmic	30	353	0.82