YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE19463
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	226	0.92
Transmembrane Helix	227	248	0.88
Non-Cytoplasmic	249	262	0.81
Transmembrane Helix	263	284	0.88
Cytoplasmic	285	291	0.72
Transmembrane Helix	292	313	0.91
Non-Cytoplasmic	314	322	0.74
Transmembrane Helix	323	344	0.86
Cytoplasmic	345	352	0.80
Transmembrane Helix	353	375	0.88
Non-Cytoplasmic	376	383	0.78
Transmembrane Helix	384	406	0.92
Cytoplasmic	407	426	0.95
Transmembrane Helix	427	447	0.94
Non-Cytoplasmic	448	464	0.90
Transmembrane Helix	465	486	0.94
Cytoplasmic	487	495	0.87
Transmembrane Helix	496	517	0.93
Non-Cytoplasmic	518	524	0.92
Transmembrane Helix	525	547	0.92
Cytoplasmic	548	562	0.92
Transmembrane Helix	563	584	0.90
Non-Cytoplasmic	585	598	0.81
Transmembrane Helix	599	621	0.89
Cytoplasmic	622	626	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTDMPYTF DQDPLDMDTS SEVYYPTLVG YGGTSNERSG STSAGKKEKK VVSINTADTR  60
   61 KSTQHLKTRN HSTSNAIDNE LTPLLHPSIS LPTVVGYDGF NEDYQAGHNP PTTTRSEIFK 120
  121 VKFQKSESEF RISEIVNVKM NMSQPFIISP FMPISTQISV DGPRSSALSA KINYESTAER 180
  181 LSIKESEGSE SDSDEESAIS DEEQAVPFLK SALHTVSALS SRQLLSISML SLANLCSTIA 240
  241 FSCIAPFYPA EAKLKNLSET QTGIVFGIFE FTMFIISPLF GKYIIFIGAR TMFIVGIAVT 300
  301 GVTAILFGFL NFLPSGNTFF WFSVLVRILE AVGDAAFVTS SFAIAAKSFP KNVAFVVGIL 360
  361 ETFAGLGYTA GPVIGGFFYD IGGFQLPFLV LGIVLLVASV LAFFLIENTK DDESNPEDKG 420
  421 MLEILRLPQI WLPIFSVVSC AISLSFLDPT LSNHLESFKL TPTEIGLMFL LCGGFYTVMC 480
  481 PVFGAIMDRL HNGENLLLFG SIATLLSMFF IGPTPLLNGY VEKDLWVIGI SLAVLGLAAS 540
  541 ALYIPCFQMC LDEVKDKGFD DNFHTYGCVS GIFQAAFGFG SFIGPTFGSV VVERVGFRWT 600
  601 TTMIAFLHII LSTVVLLGII IKKCRR