YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7497735
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENTKNTIWL PIYSLNGSLN NFYLILALFE LISYFLTAIL VLKTCKIIQK SKHFHINMNI  60
   61 LVIGLISQWF EAFVSKLAIM PYQVGILSVD NSKSTYISWW TSELSDMVQV PNFFQVLALY 120
  121 LPGLFIWHYI YSMFIGVTCV GVERIFATYY IRDYEKTPRK HIGAGLMVLT HCLSFPFSYF 180
  181 MVNNRISFIL ADTLCIACVG AVCVVYLILW LVNERHRKNL TARGAYHLAQ QFQVKENIRH 240
  241 IMLARNIISC ATFFVAVTCG LLMTIVLDLI PIWLKNPMAQ CIENCIFLNP LLICSVTLFS 300
  301 VPAWKNEFCQ SIPIFRKFRN ESITVRKSLG PDSDTKEYFN QLKNALRKID KIFQKLAEVA 360
  361 KNCRKLQKIS RSFQKLLKVA ESCQKLPEIA EN

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.95
Transmembrane Helix	21	42	0.93
Cytoplasmic	43	53	0.87
Transmembrane Helix	54	73	0.88
Non-Cytoplasmic	74	124	0.89
Transmembrane Helix	125	147	0.83
Cytoplasmic	148	160	0.91
Transmembrane Helix	161	181	0.93
Non-Cytoplasmic	182	187	0.88
Transmembrane Helix	188	210	0.94
Cytoplasmic	211	246	0.93
Transmembrane Helix	247	267	0.93
Non-Cytoplasmic	268	285	0.76
Transmembrane Helix	286	304	0.79
Cytoplasmic	305	392	0.83