YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRRS1_DANRE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.93
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	368	0.99
Transmembrane Helix	369	389	0.94
Cytoplasmic	390	406	0.89
Transmembrane Helix	407	430	0.92
Non-Cytoplasmic	431	438	0.78
Transmembrane Helix	439	461	0.92
Cytoplasmic	462	477	0.84
Transmembrane Helix	478	499	0.87
Non-Cytoplasmic	500	506	0.91
Transmembrane Helix	507	530	0.80
Cytoplasmic	531	549	0.91
Transmembrane Helix	550	570	0.96
Non-Cytoplasmic	571	573	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGVCKSPQR LLFVLVSCFG LVQSYKNGLV SSVCGSMMPN HGANAQISSP PFTVTADKTT  60
   61 FKEGDQITVT LNSQTGYQFE GFMLQARQVG SSSSIGTFSV TASNMQLLTC DGVSARSVSH 120
  121 TSNSKKSSIQ AKWTAPTSGQ LGNIQFSVTF VKSDDTFWVG VKSSAVVYNG AGTTGTSTTP 180
  181 ATVAPTVASI PGCGTTKVCF SQPNNCDPTT STGCYFVAVQ ASSDQSEMRI EMFGPADGYV 240
  241 AIGFSDDQQM GNDDVYICGK DNNGNLQVQH AFNSGRSRPA ILSLGNVTDI LTAVTNGNIN 300
  301 CSFISRNTIS TASRAATTNE YYLMIAAGSS SQGNIQFHTN KYVTSTKVNL LNPSVVITSE 360
  361 EEFPPMVKAH GCLMLISWMA TGSIGMIIAR YLKGVAKGQG CFGKDFWFVA HVSLMTLSII 420
  421 ATAIAFIIVF VSAGDWAGGA HPVLGCLVMI LSLIQPIVAA FRCEPQHERR FVFNWAHSCN 480
  481 AFAIKCLAVA AIFTGLALFE EYDSDGWMLK VMGGYLAWEA LMYILQDLNL RAKKKDSQLC 540
  541 SCEPMRPETI LLFLFIIGNL AFLIALLVGI GSA