YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20986
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLNSIIFLF FIIGLISCKS ILIFNPIFGF SHVKFISKMA DIIADHGHNV TLFQPFHLAL  60
   61 KNADKLVKNQ NIKIINYYPD HYDELLKTEK KTFPMLWDSQ LMNNPILCSF MMPNIMEDSW 120
  121 EKTATQLLKD QKVIEDLKNQ KFDVVLSETF ELTGIYLAYL LEIPNIPIMS AVRFVPYNEA 180
  181 FGQPSTVGYI PQQGSQLAPE AGFLDRLNDV YRNYFYTLTM KRASQLQNTF IEKAIGRPVP 240
  241 NWKDLVTRSP IYITNSNPYL DFAVPTTATI VHVGGITIDL EKMRHVAALT EEYENIFAER 300
  301 ESTVLISFGS VIRSYEMPDN FKAGIINMFK SLPEVTFIWK YEKDDVEFQK RLPKNVHLKN 360
  361 WVPQPSLLAD KRLKLFVTHG GLGSTMEVAY TGKPALMIPI FGDQPQNADM LSRHGGAVAY 420
  421 DKFELADGDK LIKIVKDMVS NPKYEKNAQE LLRVLSNQPI DPVMNLMKHL EFAME

Type	Start	End	Confidence
Cytoplasmic	1	6	0.61
Transmembrane Helix	7	28	0.71
Non-Cytoplasmic	29	475	0.91