YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE21307
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.54
Transmembrane Helix	19	40	0.90
Cytoplasmic	41	45	0.50
Transmembrane Helix	46	66	0.80
Non-Cytoplasmic	67	73	0.56
Transmembrane Helix	74	95	0.75
Cytoplasmic	96	104	0.67
Transmembrane Helix	105	129	0.78
Non-Cytoplasmic	130	138	0.79
Transmembrane Helix	139	158	0.92
Cytoplasmic	159	201	0.90
Transmembrane Helix	202	223	0.90
Non-Cytoplasmic	224	236	0.83
Transmembrane Helix	237	257	0.90
Cytoplasmic	258	271	0.90
Transmembrane Helix	272	293	0.91
Non-Cytoplasmic	294	298	0.87
Transmembrane Helix	299	320	0.92
Cytoplasmic	321	337	0.75
Transmembrane Helix	338	357	0.88
Non-Cytoplasmic	358	365	0.77
Transmembrane Helix	366	380	0.51
Cytoplasmic	381	381	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFRTIRSMY DYTPTEKKHI LWAVSFGTIV GIFPINMLYV QCGARLAFFS AGLLSAMTTA  60
   61 FTPWAASQSM WFLVALRFLQ GVAYSADFAA IGIIISKWAP LDETAVFIAT LTSFTAISSI 120
  121 ITNGVSGVIC ESHLGWRWSF YLHAAACLIV FLTWGLVYKN DPSLHKSVSA KELGKIQKNK 180
  181 SDAHMKDSMQ IPYRKIFTSP VVITVWLCAF TELSTLILIA TYAPIYFRNV LKFDIKMIGF 240
  241 YLGLILAIHL PFRFVCALLS DKTRCISEMS KIHIFNTLSV GFVGISFIAF GQIPHEHNLS 300
  301 AVICLGVLEC FTSFSSGGFY KCGTLHARQF SSIVISAIQF TKCIALFSGP ALVAFFVTDE 360
  361 SNQTQWSHVF MTLAGFTFFV S