YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE21717
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.86
Transmembrane Helix	8	26	0.86
Non-Cytoplasmic	27	56	0.92
Transmembrane Helix	57	79	0.85
Cytoplasmic	80	89	0.80
Transmembrane Helix	90	110	0.94
Non-Cytoplasmic	111	117	0.81
Transmembrane Helix	118	140	0.91
Cytoplasmic	141	152	0.83
Transmembrane Helix	153	172	0.93
Non-Cytoplasmic	173	182	0.69
Transmembrane Helix	183	202	0.95
Cytoplasmic	203	268	0.97
Transmembrane Helix	269	285	0.95
Non-Cytoplasmic	286	300	0.74
Transmembrane Helix	301	323	0.88
Cytoplasmic	324	330	0.91
Transmembrane Helix	331	352	0.92
Non-Cytoplasmic	353	365	0.83
Transmembrane Helix	366	389	0.90
Cytoplasmic	390	399	0.88
Transmembrane Helix	400	422	0.88
Non-Cytoplasmic	423	426	0.82
Transmembrane Helix	427	451	0.89
Cytoplasmic	452	505	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWQTIRLIS IYAALSAITN FPSGFTNSSV NTAVEKLHKF IATSLRQPGV PDDENTIALF  60
   61 QSATLNCWFV AQIFGAIMTP MISDGYGRKF GYIVCVTTTI FATFVQYFSI CFYMPWGLIL 120
  121 GRSLTALVSP LGDACLLLYV QETSPLEIRG MSSFLCEIGY GTMCVLGMVL GMKSVLGESL 180
  181 SRLLLLSLIP LFCSLCFIVR IPETPKFLMI MRNDREKALK SLEFFQGESS DNAYIMSEYQ 240
  241 AEKMTDKLSQ DSTFVDLLSK WHLRQAMRLA LATLSLTLSF YPILQSSTYF LLESGVSVDM 300
  301 AQICSTMAQV VLTLSSICGA SIIDRFSRRK LLITFGILSN VLLVAFSFFS HLSATVVSPY 360
  361 SWPKYACLAS LLAYCISFGM VLGPLSWFVA PELVSQRHRC TIFSACFAIH NLLIALTDFA 420
  421 TIPLFRIFGS MCFVFLFVVP SFFCLCYIYL FMPETLGKST LDIIHEMIDR GLHGSEHHLV 480
  481 NLDTPTLQIR PRMFSSNSDG HLRIY