YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-5
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIHHVFLIF VLLFIKNVAS YNFLVISPVY GFSHMKSMAI IANQLADAGH QVTYFQPFVV  60
   61 ELFKDHDLIK NPNIEIMNYF HDEEGKKNIP GHSVLSDAWT SYKYQSDVGQ KIFAPRILHQ 120
  121 SFQEMCRHMF EDEALHRQLK DKKFDVVLSE TFDFCGLYLA DYLEMPAIIS VFTGNRLNAI 180
  181 TNALGEPSFL HYLPSPSSSF NANMSLYDRF NNFWHKILSS STFGELFDRQ YADVYRLTNG 240
  241 KARHWKQILN DVTYHFSNSN PYLDFVIPTI AKVIPIGGYT MDYKQVPPVS KDLDTILNLR 300
  301 SSTVFISYGT MISAKYMPDE YKQSMIDFFK DNKNVTFLWK YEEPEEKFIK ENIPDNVHLS 360
  361 TWFPQQSLLA DKRVKLFITH GGLGSTMELA YSAKPAIVTP LFADQPSNAQ MLERHGSVEV 420
  421 LSKHDIPNWK KQSDLLKTML ADKKYQEAAT RLADILNNQP ISPRELMLKH AENAARFGKI 480
  481 PSLTPFAKDM GFIEFYNIDL IIYSVSFTLF AIYVTIEIFG IVKNCCKTRK LKNE

Type	Start	End	Confidence
Signal Peptide	1	20	0.79
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	499	0.98
Transmembrane Helix	500	522	0.64
Cytoplasmic	523	534	0.66