YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gpn-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSDTLAWLL ILLLAMPQET HGFYFTRRDI HGVMCSSSFE DQCTMEERSR LQTNTVDMLT  60
   61 RKHQDRVIVI RSFLTSQIRI FNEFFSKTLR TVHMDLDLMF SKTYGSFYQE NIQLLNDFFK 120
  121 KIKGFSVSFA ETSMKTIVEL FFDELFQVMF SIANPFYSIT NDQRVCMESF YREIEAFDDI 180
  181 PQKIVNQLSL PLSNWKHFLG SLESLNGILE GYLNITFKEE CERGLTRMET CAQCQRISEK 240
  241 PCQAYCVNIL SGCTHQMLDS EGAWRAATES MIKLGNQLNH RQNLVSALQP IPVLISEAIM 300
  301 HFQEKRDYIT NKMIGKCLLN NEDFGLRKKR SAKFKAFPVI TTKRSRDHLI LNQMFQSFAN 360
  361 KMDEWKVFFG NLPEYLCRGE DWASKEDERC WNGTGVGEYK LPLVNYTNPF SNPEYQGTDF 420
  421 LTFRGNYIEE RLRLHWLHSR ISHILSGKDS QKSEAYYSHK AEARIQSDDE DYSDYEYESS 480
  481 GNFPGSGSYM SSKREYSPYF RKHDDKIEIV IEPYPVISTS RKHFHSFVIV IFMLFSALFQ 540
  541 CSR

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	522	0.99
Transmembrane Helix	523	542	0.82
Cytoplasmic	543	543	0.88