YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27449
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINSLLVYSL IPFSFLLAAD NTENATTSAE FLLPTRRTPP AKPQHGVDFL GPLWLSRTYK  60
   61 ITCCRRGSPV AENPQLVSNW TETASDYAVD EKLVGTEQDD HCRVFQGTFL LSAAALYNST 120
  121 FVSYGVQCKC PDAEQQQLDQ HCRQLPACQN GGYRSQSIGR RCSCPQPYFG EYCEKLCDQG 180
  181 QVLAGIDGNN YCSCLPFYQG ETCSDLVCLN GGHEFRGRCS CPHNFVGYHC EIDTNKTKSN 240
  241 SRYTKYGPQT NAENGELFSR DISGTVFSLV MIVVLVVSMY LLMKHRMQVQ SQYTSSRREE 300
  301 MNRAAQIYGI ERGGAGTTTI SRDDIRILPF VAAGIQPPPP YAVSRTARRE ALPPLPSYED 360
  361 ATKDTVIGAA ATVIEMQATT PTDASLQSPP AAHPDHSDVP DIPSSSSPPP PFDSEPPTIQ 420
  421 RNVSTRRSL

Type	Start	End	Confidence
Signal Peptide	1	18	0.94
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	263	0.97
Transmembrane Helix	264	283	0.90
Cytoplasmic	284	429	0.93