YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gar-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSSLGNAD DPRFRQTHLF QMLVKVINTS AENATKTAIA TSSTSTPSFV DTYSTSSLLG  60
   61 EEGRMVMIVV IGAMFALVTS LGNLMVMVSF KIDKQLQTIS NYFLFSLAVA DIAIGVISIP 120
  121 MFTYYTAIQK WDLGYTMCQF WLCIDYLMSN ASVLNLLLIS FDRYFSVTRP LSYRPRRTTK 180
  181 KALTMIACTY IISLILWPPW IISWPYIEGK FTAEPGTCVV QFLQTNPYVT VGTAVAAFYL 240
  241 PVTIMCILYT RVYWETQKRQ KEFGKLQATQ FSRRSMKRDV SSTSIIKSSG SMRKKNNQDG 300
  301 YVEDSVTPCT SSRNSKRKSW LRNCTGKSNS SSEDSSEAVA MNLDDTSLSS SHFALSGSRR 360
  361 RNISPPCTPM PTNFEDEEQT DAGASMRNGS ARFRSRPSDT GKNNNSDTYT VLIELNDEGS 420
  421 RPSVRLSSCE PYLDEPISTR NRSKSDCNSE IDERRHSLLN KQSPFKNGRI LKNFSSQERK 480
  481 SEKEQRKNER KQESKAAKTL SAILCAFIAT WTPYNLIVCW EAFFPNTVPN VLWTFSYFLC 540
  541 YINSTINPLC YALCNARFRH TYMRILRCKF KAERPTMNQG YVRRN

Type	Start	End	Confidence
Non-Cytoplasmic	1	64	0.87
Transmembrane Helix	65	87	0.91
Cytoplasmic	88	101	0.79
Transmembrane Helix	102	124	0.90
Non-Cytoplasmic	125	141	0.81
Transmembrane Helix	142	161	0.89
Cytoplasmic	162	181	0.89
Transmembrane Helix	182	202	0.93
Non-Cytoplasmic	203	229	0.95
Transmembrane Helix	230	253	0.88
Cytoplasmic	254	495	0.99
Transmembrane Helix	496	518	0.85
Non-Cytoplasmic	519	532	0.84
Transmembrane Helix	533	555	0.88
Cytoplasmic	556	585	0.95