YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	paqr-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPDEVNRAL GHYLNDADSG ELVVEDSTTV QVKNPEARKT GDKIEVFYSR KTTVVSPTNS  60
   61 DDEDADFCSD SELLPQQEGH RSRATSFAGR IRAGSDDEAM PKHTILRYRR KKGGQWREIN 120
  121 LQGTPDKRKD DEDELEVDVK EDRSEQTGIV TKTYEARWKV LKYEHLPEWL QDNEFLRHGH 180
  181 RPPLPSFSEC FKSIWSLHTE TGNIWTHLIG CVAFFFLACW FLTRPDNHIQ FQEKVVFSFF 240
  241 FAGAVLCLGL SFAFHTLSCH SVNVVKIFCK LDYMGISLLI IGSFIPWIYY GFYCRREPKI 300
  301 TYIAMVSVLG IGAIVVSLWD KFSESRFRPI RAAVFVGMGC SGVIPTIHYI ITDGVHSLFA 360
  361 DNSFHWLLLM AFLYLLGAGL YATRTPERFF PGKCDIWFQS HQLFHTCVVI AAFVHYYGIS 420
  421 EMAFARLNEQ CPVR

Type	Start	End	Confidence
Cytoplasmic	1	202	0.92
Transmembrane Helix	203	223	0.94
Non-Cytoplasmic	224	235	0.85
Transmembrane Helix	236	258	0.90
Cytoplasmic	259	270	0.77
Transmembrane Helix	271	291	0.92
Non-Cytoplasmic	292	299	0.79
Transmembrane Helix	300	319	0.96
Cytoplasmic	320	329	0.79
Transmembrane Helix	330	351	0.92
Non-Cytoplasmic	352	362	0.85
Transmembrane Helix	363	383	0.93
Cytoplasmic	384	400	0.82
Transmembrane Helix	401	419	0.85
Non-Cytoplasmic	420	434	0.81