YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	apy-1
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQESNSNFF NFLLFGFVTA IAFYSGTQFN KSSEQEEHIN HANLYSVKKF DDGAKEYSIM  60
   61 LITDLDHDSK DGKKWKSLVS RGFLKVSADH KHADIHFDKD SEYYVDTNIA AGGRAMELSD 120
  121 LAVFNGKLYS IDDRTGLIYQ ISDKKALPWV LLNDGPGNVV KGFKGEWITV KDTELIVGGL 180
  181 GKEWTTTDGV YVNDHPMWVK HVSAHGAVHH ENWKDVYIRV RRAAGIEYPG YMIHEAVQWS 240
  241 AIHRKWFFLP RRMSNEKYSE AEDENRGTNV LVIGNEELTD FEVVRVGSEN NKSRGFAAFQ 300
  301 FVPNTHHQLI VAIKSEEKDG KPVASYASVF DIHGNVILDE YLLHGPYKYE GIAFA

Type	Start	End	Confidence
Cytoplasmic	1	7	0.88
Transmembrane Helix	8	27	0.88
Non-Cytoplasmic	28	355	0.99