YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acc-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.52
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHPGWIMVS FLTELLSQSS KGIAQSLDNC ANDTEIINAL LKDSYNKHYI PSHPTHVRVD  60
   61 MWVQEVTSVS ELTQDFEIDL YINEFWEDPA LVYEDMNPCK RNISFDDKVL QRLWLPNTCF 120
  121 INSKSAAIHE SPFKNVFLMV FSNGTLWTNY RMKLTGPCDM KLKRFPFDKQ KCYLTFESFN 180
  181 YNTGEVRMQW NQPYPVILLK RIELPDFKLV NFSVIAVEQM YPAGWWDELT VAFVFERRYG 240
  241 WYVLQGYIPT MVTIVISWIS FYLGPRAIPA RTMLGVNSLL AMTFQFGNII RNLPRVSYVK 300
  301 AIDVWMLSGM LFIFLSLLEL AVVGFMSRNE GLPPKVKKRK RQEDDDEGFS WKSMQTSPHL 360
  361 ELRQFWVDKR VNSLRNDSAV PPVEDYAPME LEQPYQNITK RREKRKWMSG LRKKWRAMRE 420
  421 LRPETVDFYS AIFFPTAYML FNISYWSFYL TSLSEYFDED VNIDQP

Type	Start	End	Confidence
Signal Peptide	1	19	0.51
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	240	0.72
Transmembrane Helix	241	262	0.91
Cytoplasmic	263	271	0.68
Transmembrane Helix	272	290	0.86
Non-Cytoplasmic	291	303	0.80
Transmembrane Helix	304	327	0.85
Cytoplasmic	328	424	0.94
Transmembrane Helix	425	448	0.81
Non-Cytoplasmic	449	466	0.92