YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	odr-2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLPLSSLHP MGLLFRLLLF WNTIVLAARE RSNTEYWKDQ HPQQRWRIYS LRLPCYSCMS  60
   61 PYLEDHYPYI SHLYRKPLSF DTHCDKHSLE TSYLYSKNCS DMCVTLRIND VVGGRRRHGY 120
  121 MRGCLSDLHG YNHSLIRTLA ERQGCLDTTA RELFLPTAQR QELEPSRLSL CACHNNLCNF 180
  181 SVSPPCFFIF LFVILVIFLM R

Type	Start	End	Confidence
Signal Peptide	1	27	0.89
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	179	0.89
Transmembrane Helix	180	199	0.85
Cytoplasmic	200	201	0.64